public final class TestGSDI {
private final static String PATH_TO_TEST_DATA = System.getProperty( "user.dir" ) + ForesterUtil.getFileSeparator()
- + "test_data" + ForesterUtil.getFileSeparator();
+ + "test_data" + ForesterUtil.getFileSeparator();
public static void main( final String[] args ) {
if ( !TestGSDI.testGSDI_against_binary_gene_tree() ) {
//--
final Phylogeny tol_143_ = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA + "tol_143.xml" )[ 0 ];
final Phylogeny gene_tree_tax_code_4_ = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA
- + "gene_tree_tax_code_4.xml" )[ 0 ];
+ + "gene_tree_tax_code_4.xml" )[ 0 ];
final GSDI gsdi_143_4_1 = new GSDI( gene_tree_tax_code_4_.copy(), tol_143_.copy(), false, true, true );
if ( gsdi_143_4_1.getDuplicationsSum() != 21 ) {
return false;
}
//--
final Phylogeny gsdi_test_gene_tree_sn_wnt = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA
- + "gsdi_test_gene_tree_sn_wnt.xml" )[ 0 ];
+ + "gsdi_test_gene_tree_sn_wnt.xml" )[ 0 ];
gsdi_test_gene_tree_sn_wnt.setRooted( true );
final GSDI a = new GSDI( gsdi_test_gene_tree_sn_wnt.copy(), tol_143_.copy(), false, true, true );
if ( a.getDuplicationsSum() != 33 ) {
}
//--
final Phylogeny gsdi_test_species_tree_sn_xml = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA
- + "gsdi_test_species_tree_sn.xml" )[ 0 ];
+ + "gsdi_test_species_tree_sn.xml" )[ 0 ];
final GSDI b = new GSDI( gsdi_test_gene_tree_sn_wnt.copy(),
gsdi_test_species_tree_sn_xml.copy(),
false,
}
//--
final Phylogeny gsdi_test_gene_tree_codes_xml = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA
- + "gsdi_test_gene_tree_codes.xml" )[ 0 ];
+ + "gsdi_test_gene_tree_codes.xml" )[ 0 ];
final Phylogeny gsdi_test_species_tree_codes_xml = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA
- + "gsdi_test_species_tree_codes.xml" )[ 0 ];
+ + "gsdi_test_species_tree_codes.xml" )[ 0 ];
final GSDI d = new GSDI( gsdi_test_gene_tree_codes_xml.copy(),
gsdi_test_species_tree_codes_xml.copy(),
false,
}
//--
final Phylogeny gsdi_test_gene_tree_sn_xml = ParserUtils.readPhylogenies( PATH_TO_TEST_DATA
- + "gsdi_test_gene_tree_sn.xml" )[ 0 ];
+ + "gsdi_test_gene_tree_sn.xml" )[ 0 ];
final GSDI e = new GSDI( gsdi_test_gene_tree_sn_xml.copy(),
gsdi_test_species_tree_sn_xml.copy(),
false,