public static final char GAP = '-';
public static final String GAP_STR = Character.toString( GAP );
public static final char TERMINATE = '*';
- static final String AA_REGEXP = "[^ARNDBCQEZGHILKMFPSTWYVXU\\-\\*]";
+ static final String AA_REGEXP = "[^ARNDBCQEZGHILKMFPSTWYVXUO\\-\\*]";
static final String DNA_REGEXP = "[^ACGTRYMKWSN\\-\\*]";
static final String RNA_REGEXP = "[^ACGURYMKWSN\\-\\*]";