// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.surfacing;
+import org.forester.protein.BinaryDomainCombination;
+import org.forester.protein.DomainId;
+
public class AdjactantDirectedBinaryDomainCombination extends BasicBinaryDomainCombination {
public AdjactantDirectedBinaryDomainCombination( final DomainId n_terminal, final DomainId c_terminal ) {
if ( ( n_terminal == null ) || ( c_terminal == null ) ) {
throw new IllegalArgumentException( "attempt to create binary domain combination using null" );
}
- _id_0 = n_terminal;
- _id_1 = c_terminal;
+ // _id_0 = n_terminal.getId();
+ // _id_1 = c_terminal.getId();
+ _data = n_terminal.getId() + BinaryDomainCombination.SEPARATOR + c_terminal.getId();
}
public AdjactantDirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) {