import java.util.List;
import org.forester.protein.BinaryDomainCombination;
-import org.forester.protein.DomainId;
import org.forester.species.Species;
public class AdjactantDirectedCombinableDomains extends BasicCombinableDomains {
- public AdjactantDirectedCombinableDomains( final DomainId n_terminal_key_domain, final Species species ) {
+ public AdjactantDirectedCombinableDomains( final String n_terminal_key_domain, final Species species ) {
super( n_terminal_key_domain, species );
}
@Override
public List<BinaryDomainCombination> toBinaryDomainCombinations() {
final List<BinaryDomainCombination> binary_combinations = new ArrayList<BinaryDomainCombination>( getNumberOfCombinableDomains() );
- for( final DomainId domain : getCombiningDomains().keySet() ) {
+ for( final String domain : getCombiningDomains().keySet() ) {
// Precondition (!): key domain is most upstream domain.
//TODO ensure this is true.
- binary_combinations.add( new AdjactantDirectedBinaryDomainCombination( getKeyDomain(), domain ) );
+ binary_combinations.add( AdjactantDirectedBinaryDomainCombination.obtainInstance( getKeyDomain(), domain ) );
}
return binary_combinations;
}