in progress

[jalview.git] / forester / java / src / org / forester / surfacing / DirectedBinaryDomainCombination.java

diff --git a/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java b/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
index 4fa9179..237bb67 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
+++ b/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
@@ -6,7 +6,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -16,7 +16,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -26,6 +26,9 @@
 
 package org.forester.surfacing;
 
+import org.forester.protein.BinaryDomainCombination;
+import org.forester.protein.DomainId;
+
 public class DirectedBinaryDomainCombination extends BasicBinaryDomainCombination {
 
     public DirectedBinaryDomainCombination( final DomainId n_terminal, final DomainId c_terminal ) {
@@ -33,8 +36,8 @@ public class DirectedBinaryDomainCombination extends BasicBinaryDomainCombinatio
         if ( ( n_terminal == null ) || ( c_terminal == null ) ) {
             throw new IllegalArgumentException( "attempt to create binary domain combination using null" );
         }
-        _id_0 = n_terminal;
-        _id_1 = c_terminal;
+        _id_0 = n_terminal.getId();
+        _id_1 = c_terminal.getId();
     }
 
     public DirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) {