import org.forester.application.surfacing;
import org.forester.go.GoId;
import org.forester.go.GoTerm;
+import org.forester.protein.BinaryDomainCombination;
+import org.forester.protein.DomainId;
+import org.forester.protein.Protein;
+import org.forester.species.Species;
import org.forester.util.BasicDescriptiveStatistics;
import org.forester.util.DescriptiveStatistics;
import org.forester.util.ForesterUtil;
domain_id,
proteins_file_writer,
"\t",
- surfacing.LIMIT_SPEC_FOR_PROT_EX );
+ surfacing.LIMIT_SPEC_FOR_PROT_EX,
+ -1 );
proteins_file_writer.close();
System.out.println( "Wrote proteins list to \"" + my_proteins_file + "\"" );
}