import java.util.SortedMap;
import java.util.SortedSet;
+import org.forester.phylogeny.Phylogeny;
import org.forester.species.Species;
import org.forester.surfacing.PrintableDomainSimilarity.PRINT_OPTION;
*
* @return SortedMap<String, SpeciesSpecificDomainSimilariyData>
*/
- public SortedMap<Species, SpeciesSpecificDomainSimilariyData> getSpeciesData();
+ public SortedMap<Species, SpeciesSpecificDcData> getSpeciesData();
public double getStandardDeviationOfSimilarityScore();
- public StringBuffer toStringBuffer( PRINT_OPTION print_option, Map<String, Integer> tax_code_to_id_map );
+ public StringBuffer toStringBuffer( PRINT_OPTION print_option,
+ Map<String, Integer> tax_code_to_id_map,
+ Phylogeny phy );
}