// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.surfacing;
public class SurfacingConstants {
- public static final String GOOGLE_WEB_SEARCH_LINK = "http://www.google.com/search?q=";
- public static final String GOOGLE_SCHOLAR_LINK = "http://scholar.google.com/scholar?q=";
- public static final String GOOGLE_SCHOLAR_LIMITS = "&as_subj=bio&as_subj=med&as_subj=chm&num=100";
- public static final String AMIGO_LINK = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
- public static final String PFAM_FAMILY_ID_LINK = "http://pfam.sanger.ac.uk/family?id=";
- public static final String NL = ForesterUtil.LINE_SEPARATOR;
- public static final String TAXONOMY_LINK = "http://beta.uniprot.org/taxonomy/?query=";
- static final boolean SECONDARY_FEATURES_ARE_SCOP = true;
- static final String SECONDARY_FEATURES_SCOP_LINK = "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?key=";
- public static final String NONE = "[none]";
- public static final String UNIPROT_LINK = "http://beta.uniprot.org/taxonomy/?query=";
- public static final String GO_LINK = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
- public static final String EOL_LINK = "http://www.eol.org/search?q=";
- public static final String TOL_LINK = "http://www.googlesyndicatedsearch.com/u/TreeofLife?q=";
- public static final String WIKIPEDIA_LINK = "http://wikipedia.org/wiki/";
+ public static final String AMIGO_LINK = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
+ public static final String EOL_LINK = "http://www.eol.org/search?q=";
+ public static final String GO_LINK = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
+ public static final String GOOGLE_SCHOLAR_SEARCH = "http://scholar.google.com/scholar?q=";
+ public static final String GOOGLE_WEB_SEARCH_LINK = "http://www.google.com/search?q=";
+ public static final String NL = ForesterUtil.LINE_SEPARATOR;
+ public static final String NONE = "[none]";
+ public static final String PFAM_FAMILY_ID_LINK = "http://pfam.janelia.org/family/";
+ public static final String UNIPROT_TAXONOMY_ID_LINK = "http://www.uniprot.org/taxonomy/";
+ static final boolean PRINT_MORE_DOM_SIMILARITY_INFO = false;
+ static final boolean SECONDARY_FEATURES_ARE_SCOP = true;
+ static final String SECONDARY_FEATURES_SCOP_LINK = "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?key=";
}