in progress

[jalview.git] / forester / java / src / org / forester / surfacing / SurfacingConstants.java

diff --git a/forester/java/src/org/forester/surfacing/SurfacingConstants.java b/forester/java/src/org/forester/surfacing/SurfacingConstants.java
index c78f157..aa588a0 100644 (file)
--- a/forester/java/src/org/forester/surfacing/SurfacingConstants.java
+++ b/forester/java/src/org/forester/surfacing/SurfacingConstants.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 
@@ -30,19 +30,16 @@ import org.forester.util.ForesterUtil;
 
 public class SurfacingConstants {
 
-    public static final String GOOGLE_WEB_SEARCH_LINK       = "http://www.google.com/search?q=";
-    public static final String GOOGLE_SCHOLAR_LINK          = "http://scholar.google.com/scholar?q=";
-    public static final String GOOGLE_SCHOLAR_LIMITS        = "&as_subj=bio&as_subj=med&as_subj=chm&num=100";
-    public static final String AMIGO_LINK                   = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
-    public static final String PFAM_FAMILY_ID_LINK          = "http://pfam.sanger.ac.uk/family?id=";
-    public static final String NL                           = ForesterUtil.LINE_SEPARATOR;
-    public static final String TAXONOMY_LINK                = "http://beta.uniprot.org/taxonomy/?query=";
-    static final boolean       SECONDARY_FEATURES_ARE_SCOP  = true;
-    static final String        SECONDARY_FEATURES_SCOP_LINK = "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?key=";
-    public static final String NONE                         = "[none]";
-    public static final String UNIPROT_LINK                 = "http://www.uniprot.org/taxonomy/?query=";
-    public static final String GO_LINK                      = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
-    public static final String EOL_LINK                     = "http://www.eol.org/search?q=";
-    public static final String TOL_LINK                     = "http://www.googlesyndicatedsearch.com/u/TreeofLife?q=";
-    public static final String WIKIPEDIA_LINK               = "http://wikipedia.org/wiki/";
+    public static final String AMIGO_LINK                     = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
+    public static final String EOL_LINK                       = "http://www.eol.org/search?q=";
+    public static final String GO_LINK                        = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
+    public static final String GOOGLE_SCHOLAR_SEARCH          = "http://scholar.google.com/scholar?q=";
+    public static final String GOOGLE_WEB_SEARCH_LINK         = "http://www.google.com/search?q=";
+    public static final String NL                             = ForesterUtil.LINE_SEPARATOR;
+    public static final String NONE                           = "[none]";
+    public static final String PFAM_FAMILY_ID_LINK            = "http://pfam.janelia.org/family/";
+    public static final String UNIPROT_TAXONOMY_ID_LINK       = "http://www.uniprot.org/taxonomy/";
+    static final boolean       SECONDARY_FEATURES_ARE_SCOP    = true;
+    static final String        SECONDARY_FEATURES_SCOP_LINK   = "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?key=";
+    static final boolean       PRINT_MORE_DOM_SIMILARITY_INFO = false;
 }