// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.test.examples;
import java.io.IOException;
import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
import org.forester.io.writers.PhylogenyWriter;
import org.forester.phylogeny.Phylogeny;
+import org.forester.phylogeny.PhylogenyMethods;
import org.forester.util.ForesterUtil;
public class Example4 {
final File treefile = new File( "/home/czmasek/tol_117_TEST.xml" );
PhylogenyParser parser = null;
try {
- parser = ForesterUtil.createParserDependingOnFileType( treefile, true );
+ parser = ParserUtils.createParserDependingOnFileType( treefile, true );
}
catch ( final IOException e ) {
e.printStackTrace();
}
Phylogeny[] phys = null;
try {
- phys = ForesterUtil.readPhylogenies( parser, treefile );
+ phys = PhylogenyMethods.readPhylogenies( parser, treefile );
}
catch ( final IOException e ) {
e.printStackTrace();