in progress...

[jalview.git] / forester / java / src / org / forester / tools / ConfidenceAssessor.java

diff --git a/forester/java/src/org/forester/tools/ConfidenceAssessor.java b/forester/java/src/org/forester/tools/ConfidenceAssessor.java
index 7fc7c90..18c9307 100644 (file)
--- a/forester/java/src/org/forester/tools/ConfidenceAssessor.java
+++ b/forester/java/src/org/forester/tools/ConfidenceAssessor.java
@@ -6,7 +6,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -16,13 +16,13 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.tools;
 
@@ -90,7 +90,7 @@ public final class ConfidenceAssessor {
             for( final Confidence confidence : confidences ) {
                 if ( confidence.getType().equals( confidence_type ) ) {
                     throw new IllegalArgumentException( "confidence [" + confidence_type
-                            + "] is already present in target" );
+                                                        + "] is already present in target" );
                 }
             }
         }
@@ -128,9 +128,9 @@ public final class ConfidenceAssessor {
                 if ( strict ) {
                     if ( evaluator.getNumberOfExternalNodes() != target.getNumberOfExternalNodes() ) {
                         throw new IllegalArgumentException( "evaluator #" + counter
-                                + " does not have the same number of external nodes ["
-                                + evaluator.getNumberOfExternalNodes() + "] than the corresponding target ["
-                                + target.getNumberOfExternalNodes() + "]" );
+                                                            + " does not have the same number of external nodes ["
+                                                            + evaluator.getNumberOfExternalNodes() + "] than the corresponding target ["
+                                                            + target.getNumberOfExternalNodes() + "]" );
                     }
                 }
                 final TreeSplitMatrix s = new TreeSplitMatrix( evaluator, strict, target );