in progress

[jalview.git] / forester / java / src / org / forester / util / BasicTableParser.java

diff --git a/forester/java/src/org/forester/util/BasicTableParser.java b/forester/java/src/org/forester/util/BasicTableParser.java
index 9ebae2b..74dd567 100644 (file)
--- a/forester/java/src/org/forester/util/BasicTableParser.java
+++ b/forester/java/src/org/forester/util/BasicTableParser.java
@@ -5,7 +5,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -15,7 +15,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -67,6 +67,12 @@ public class BasicTableParser {
         final boolean use_start_of_comment_line = !( ForesterUtil.isEmpty( start_of_comment_line ) );
         while ( ( line = reader.readLine() ) != null ) {
             line = line.trim();
+            if ( !ForesterUtil.isEmpty( line )
+                    && ( ( ( line.charAt( 0 ) == '"' ) && ( line.charAt( line.length() - 1 ) == '"' ) && ( ForesterUtil
+                            .countChars( line, '"' ) == 2 ) ) || ( ( line.charAt( 0 ) == '\'' )
+                            && ( line.charAt( line.length() - 1 ) == '\'' ) && ( ForesterUtil.countChars( line, '\'' ) == 2 ) ) ) ) {
+                line = line.substring( 1, line.length() - 1 ).trim();
+            }
             if ( saw_first_table
                     && ( ForesterUtil.isEmpty( line ) || ( tables_separated_by_single_string_line && ( line
                             .indexOf( column_delimiter ) < 0 ) ) ) ) {