make PH, aPH, CL selection

[jalview.git] / forester / java / src / org / forester / util / ForesterConstants.java

diff --git a/forester/java/src/org/forester/util/ForesterConstants.java b/forester/java/src/org/forester/util/ForesterConstants.java
index 3edec56..2a19ee8 100644 (file)
--- a/forester/java/src/org/forester/util/ForesterConstants.java
+++ b/forester/java/src/org/forester/util/ForesterConstants.java
@@ -5,7 +5,7 @@
 // Copyright (C) 2000-2009 Christian M. Zmasek
 // Copyright (C) 2007-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -15,25 +15,34 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 
 public final class ForesterConstants {
 
-    public final static String  PHYLO_XML_VERSION           = "1.10";
+    public final static String  FORESTER_VERSION            = "1.045";
+    public final static String  FORESTER_DATE               = "161019";
+    public final static String  PHYLO_XML_VERSION           = "1.20";
     public final static String  PHYLO_XML_LOCATION          = "http://www.phyloxml.org";
     public final static String  PHYLO_XML_XSD               = "phyloxml.xsd";
     public final static String  XML_SCHEMA_INSTANCE         = "http://www.w3.org/2001/XMLSchema-instance";
     public final static String  LOCAL_PHYLOXML_XSD_RESOURCE = "resources/phyloxml.xsd";
     public final static String  PHYLO_XML_SUFFIX            = ".xml";
-    public final static String  UTF8                        = "UTF-8";
+    public final static String  UTF_8 = "UTF-8";
+    public final static String  ISO_8859_1 = "ISO-8859-1";
     public final static String  PHYLO_XML_REFERENCE         = "Han MV and Zmasek CM (2009): \"phyloXML: XML for evolutionary biology and comparative genomics\", BMC Bioinformatics 10:356";
     public final static boolean RELEASE                     = false;
+
+    public enum PhylogeneticTreeFormats {
+        NH, NHX, NEXUS, PHYLOXML
+    }
+
+  
 }