fixing lining up of domains.

[jalview.git] / forester / java / src / org / forester / util / TaxonomyUtil.java

diff --git a/forester/java/src/org/forester/util/TaxonomyUtil.java b/forester/java/src/org/forester/util/TaxonomyUtil.java
index 496c939..ee5427a 100644 (file)
--- a/forester/java/src/org/forester/util/TaxonomyUtil.java
+++ b/forester/java/src/org/forester/util/TaxonomyUtil.java
@@ -26,6 +26,9 @@ public final class TaxonomyUtil {
     }
     private final static Map<String, String>  _default_taxcode_taxgroup_map = new HashMap<String, String>();
     static {
+        put( "BUFBU", "deuterostomia" );
+        put( "NOTVI", "deuterostomia" );
+        put( "SIRIN", "deuterostomia" );
         put( "ASTMX", "deuterostomia" );
         put( "CALMI", "deuterostomia" );
         put( "FICAL", "deuterostomia" );
@@ -166,6 +169,12 @@ public final class TaxonomyUtil {
         put( "SCHMA", "protostomia" );
         put( "CLOSI", "protostomia" );
         put( "SCHMD", "protostomia" );
+        put( "ANOGL", "protostomia" );
+        put( "BLAGE", "protostomia" );
+        put( "ZOONE", "protostomia" );
+        put( "SCHAM", "protostomia" );
+        put( "GRYPE", "protostomia" );
+        put( "ONCFA", "protostomia" );
         put( "ACRDI", "cnidaria" );
         put( "NEMVE", "cnidaria" );
         put( "HYDVU", "cnidaria" );
@@ -361,6 +370,7 @@ public final class TaxonomyUtil {
         put( "ALIXX", "stramenopiles" );
         put( "BLAHO", "stramenopiles" );
         put( "BIGNA", "rhizaria" );
+        put( "RETFI", "rhizaria" );
         put( "TRYB2", "excavata" );
         put( "TRYCR", "excavata" );
         put( "LEIMA", "excavata" );