inprogress

[jalview.git] / forester / java / src / org / forester / ws / seqdb / EbiDbEntry.java

diff --git a/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java b/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
index 2f1a64e..c8131ad 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
+++ b/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 
@@ -47,11 +47,10 @@ public final class EbiDbEntry implements SequenceDatabaseEntry {
         throw new CloneNotSupportedException();
     }
 
-    
     public static SequenceDatabaseEntry createInstanceFromPlainTextForRefSeq( final List<String> lines ) {
         final EbiDbEntry e = new EbiDbEntry();
         for( final String line : lines ) {
-          //  System.out.println( "-" + line );
+            //  System.out.println( "-" + line );
             if ( line.startsWith( "ACCESSION" ) ) {
                 e.setPA( DatabaseTools.extract( line, "ACCESSION" ) );
             }
@@ -62,10 +61,7 @@ public final class EbiDbEntry implements SequenceDatabaseEntry {
                 else {
                     e.setDe( DatabaseTools.extract( line, "DEFINITION" ) );
                 }
-               
-                
             }
-         
             else if ( line.startsWith( "SOURCE" ) ) {
                 if ( line.indexOf( "(" ) > 0 ) {
                     e.setOs( DatabaseTools.extract( line, "SOURCE", "(" ) );
@@ -74,17 +70,13 @@ public final class EbiDbEntry implements SequenceDatabaseEntry {
                     e.setOs( DatabaseTools.extract( line, "SOURCE" ) );
                 }
             }
-            
         }
         return e;
     }
-    
-    
-    
+
     public static SequenceDatabaseEntry createInstanceFromPlainText( final List<String> lines ) {
         final EbiDbEntry e = new EbiDbEntry();
         for( final String line : lines ) {
-            
             if ( line.startsWith( "PA" ) ) {
                 e.setPA( DatabaseTools.extract( line, "PA" ) );
             }
@@ -181,8 +173,8 @@ public final class EbiDbEntry implements SequenceDatabaseEntry {
     public String getProvider() {
         return _provider;
     }
-    
+
     public void setProvider( final String provider ) {
-         _provider = provider;
+        _provider = provider;
     }
 }