in progress...

[jalview.git] / forester / java / src / org / forester / ws / seqdb / SequenceDatabaseEntry.java

diff --git a/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java b/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
index 9ae7892..d1cd293 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
+++ b/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
@@ -21,23 +21,44 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 
-public interface SequenceDatabaseEntry {
+import java.util.SortedSet;
 
-    public boolean isEmpty();
+import org.forester.go.GoTerm;
+import org.forester.phylogeny.data.Accession;
+import org.forester.phylogeny.data.Annotation;
+import org.forester.sequence.MolecularSequence;
+
+public interface SequenceDatabaseEntry {
 
     public String getAccession();
 
+    public String getGeneName();
+
+    public SortedSet<GoTerm> getGoTerms();
+
+    public SortedSet<Annotation> getAnnotations();
+
     public String getProvider();
 
     public String getSequenceName();
 
-    public String getTaxonomyScientificName();
+    public String getSequenceSymbol();
 
     public String getTaxonomyIdentifier();
 
-    public String getSequenceSymbol();
+    public String getTaxonomyScientificName();
+
+    public boolean isEmpty();
+
+    public SortedSet<Accession> getCrossReferences();
+
+    public String getMap();
+
+    public String getChromosome();
+
+    public MolecularSequence getMolecularSequence();
 }
\ No newline at end of file