// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.ws.seqdb;
public final static String CELLULAR_ORGANISMS = "cellular organisms";
public final static String VIRUSES = "Viruses";
public final static UniProtTaxonomy DROSOPHILA_GENUS = new UniProtTaxonomy( new String[] {
- CELLULAR_ORGANISMS, EUKARYOTA, "Metazoa", "Arthropoda", "Hexapoda", "Insecta", "Pterygota", "Neoptera",
- "Endopterygota", "Diptera", "Brachycera", "Muscomorpha", "Ephydroidea", "Drosophilidae", "Drosophila" },
+ CELLULAR_ORGANISMS, EUKARYOTA, "Metazoa", "Ecdysozoa", "Arthropoda", "Hexapoda", "Insecta", "Pterygota",
+ "Neoptera", "Endopterygota", "Diptera", "Brachycera", "Muscomorpha", "Ephydroidea", "Drosophilidae",
+ "Drosophila" },
"",
"fruit flies",
"Drosophila",
"species",
"283909" );
- // public final static UniProtTaxonomy NUCLEARIIDAE_AND_FONTICULA = new UniProtTaxonomy( new String[] {
- // CELLULAR_ORGANISMS, EUKARYOTA, "Nucleariidae and Fonticula group" }, "", "", "", "", "", "1001604" );
public UniProtTaxonomy( final String line ) {
final String[] items = line.split( "\t" );
if ( items.length < 5 ) {
}
_lineage.add( _scientific_name );
if ( _lineage.isEmpty() ) {
- throw new IllegalArgumentException( "lineage in a UniProt Taxonomy can not be empty\n: " + line );
+ throw new IllegalArgumentException( "lineage in a UniProt taxonomy can not be empty\n: " + line );
}
}