sorting added ...

[jalview.git] / forester / java / src / org / forester / ws / uniprot / UniProtWsTools.java

diff --git a/forester/java/src/org/forester/ws/uniprot/UniProtWsTools.java b/forester/java/src/org/forester/ws/uniprot/UniProtWsTools.java
index 5906a8c..22c46c7 100644 (file)
--- a/forester/java/src/org/forester/ws/uniprot/UniProtWsTools.java
+++ b/forester/java/src/org/forester/ws/uniprot/UniProtWsTools.java
@@ -54,7 +54,7 @@ public final class UniProtWsTools {
     // \Z => end of String
     private final static Pattern UNIPROT_AC_PATTERN = Pattern
                                                             .compile( "(?:\\A|.*[^a-zA-Z0-9])([A-Z]\\d[A-Z0-9]{3}\\d)(?:[^a-zA-Z0-9]|\\Z)" );
-    private final static boolean DEBUG              = true;
+    private final static boolean DEBUG              = false;
 
     private static String encode( final String str ) throws UnsupportedEncodingException {
         return URLEncoder.encode( str.trim(), URL_ENC );
@@ -121,6 +121,9 @@ public final class UniProtWsTools {
         else if ( sn.equals( "Xenopus" ) ) {
             return hack( UniProtTaxonomy.XENOPUS_GENUS );
         }
+        // else if ( sn.equals( "Nucleariidae and Fonticula group" ) ) {
+        //     return hack( UniProtTaxonomy.NUCLEARIIDAE_AND_FONTICULA );
+        // }
         final List<String> result = getTaxonomyStringFromScientificName( sn, max_taxonomies_return );
         if ( result.size() > 0 ) {
             return parseUniProtTaxonomy( result );