compactor work

[jalview.git] / forester / resources / phyloxml_schema / 1.10 / phyloxml.xsd

diff --git a/forester/resources/phyloxml_schema/1.10/phyloxml.xsd b/forester/resources/phyloxml_schema/1.10/phyloxml.xsd
index 5512426..9388f03 100644 (file)
--- a/forester/resources/phyloxml_schema/1.10/phyloxml.xsd
+++ b/forester/resources/phyloxml_schema/1.10/phyloxml.xsd
@@ -85,7 +85,6 @@
          <xs:element name="confidence" type="phy:Confidence" minOccurs="0" maxOccurs="unbounded"/>\r
          <xs:element name="width" type="xs:double" minOccurs="0"/>\r
          <xs:element name="color" type="phy:BranchColor" minOccurs="0"/>\r
-         <xs:element name="node_id" type="phy:Id" minOccurs="0"/>\r
          <xs:element name="taxonomy" type="phy:Taxonomy" minOccurs="0" maxOccurs="unbounded"/>\r
          <xs:element name="sequence" type="phy:Sequence" minOccurs="0" maxOccurs="unbounded"/>\r
          <xs:element name="events" type="phy:Events" minOccurs="0"/>\r
@@ -126,7 +125,7 @@
    </xs:complexType>\r
    <xs:simpleType name="TaxonomyCode">\r
       <xs:restriction base="xs:token">\r
-         <xs:pattern value="[A-Z0-9]{3,5}"/>\r
+         <xs:pattern value="([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA"/>\r
       </xs:restriction>\r
    </xs:simpleType>\r
    <xs:simpleType name="Rank">\r
@@ -388,7 +387,7 @@
    </xs:complexType>\r
    <xs:simpleType name="ref">\r
       <xs:restriction base="xs:token">\r
-         <xs:pattern value="[a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s=]+"/>\r
+         <xs:pattern value="[a-zA-Z0-9_]+:\S+"/>\r
       </xs:restriction>\r
    </xs:simpleType>\r
    <xs:simpleType name="AppliesTo">\r