class RunPhyloPipeline
- LAUNCH_ANALYSIS = true
+ LAUNCH_ANALYSIS = false
HOME = "/home/czmasek/"
FORESTER_RUBY = "#{HOME}SOFTWARE/FORESTER/DEV/forester/forester/ruby/evoruby/exe/"
PFAM = "#{HOME}DATA/PFAM/PFAM270X/"
input_files = Dir.entries(".").select { |f| !File.directory?( f ) && f.downcase.end_with?( ".fasta" ) }
+ input_files.sort!
+
puts "Input files:"
input_files.each do | input |
puts input
unless File.exist? input
error "expected to already exist: " + input
end
- puts "a. identifier normalization already done:" + input
+ puts "a. identifier normalization already done: " + input
end
else
error "illegal name: " + input