require 'lib/evo/io/parser/fasta_parser'
require 'lib/evo/io/parser/ncbi_tseq_parser'
require 'lib/evo/io/parser/hmmsearch_domain_extractor'
-require 'lib/evo/tools/domain_sequence_extractor'
-require 'lib/evo/tools/hmmscan_parser'
-require 'lib/evo/tools/domains_to_forester'
+require 'lib/evo/tool/domain_sequence_extractor'
+require 'lib/evo/tool/hmmscan_summary'
+require 'lib/evo/tool/domains_to_forester'
require 'lib/evo/io/parser/general_msa_parser'
require 'lib/evo/io/parser/basic_table_parser'
require 'lib/evo/util/command_line_arguments'
def test_hmmscan_parser()
begin
- h = Evoruby::HmmscanParser.new()
+ h = Evoruby::HmmscanSummary.new()
rescue Exception => e
puts()
puts( e.to_s )