improved removal of identical seqs

[jalview.git] / forester / ruby / evoruby / lib / evo / apps / multi_sequence_extractor.rb

diff --git a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
index 7f9ffe8..8e6dabd 100644 (file)
--- a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
@@ -206,6 +206,9 @@ module Evoruby
                             Util.fatal_error( PRG_NAME, "unexpected format: " + line )
                         end
                         species = values[ 0 ]
+                        if species == "BRADI" || species == "ASPNG" || species == "SCLSC" || species == "PTEVA"  || species == "EIMTE"
+                          next
+                        end
                         seq_name = values[ 1 ]
                         if ( species != current_species )
                             current_species = species