inprogress

[jalview.git] / forester / ruby / evoruby / lib / evo / io / parser / hmmscan_domain_extractor.rb

diff --git a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
index e9d0bf0..39a0088 100644 (file)
--- a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
@@ -20,7 +20,7 @@ module Evoruby
 
   class HmmscanDomainExtractor
 
-    ADD_TO_CLOSE_PAIRS = 20
+    ADD_TO_CLOSE_PAIRS = 0
 
     def initialize
     end
@@ -399,7 +399,7 @@ module Evoruby
                 index.to_s  + "+" + ( index + 1 ).to_s,
                 actual_out_of,
                 from,
-                hmmscan_data.env_to,
+                to,
                 in_msa,
                 out_msa_pairs,
                 add_position,