print_counts( per_species_counter, log, Constants::LINE_DELIMITER )
per_species_counter = 0
end
- puts " " + species_counter.to_s + ": " + current_species + " [" + my_readlink + "]"
+ puts " " + species_counter.to_s + ":" + current_species + " [" + my_readlink + "]"
log << species_counter.to_s + ": " + current_species + " [" + my_readlink + "]" + Constants::LINE_DELIMITER
species_counter += 1
end
rescue Exception => e
Util.fatal_error( PRG_NAME, "error: " + e.to_s )
end
- if @seqs <= 10000000
+ if @seqs <= 100000000
@file_to_msa[ input ] = msa
@seqs += msa.get_number_of_seqs
- puts "total seqs in memory: " + @seqs.to_s
+ puts " total seqs in memory: " + @seqs.to_s
end
msa
end