log << counter.to_s + ': ' + phylogeny_file + ' -> ' + outfile + NL
phylogeny_id = get_id( phylogeny_file )
-
+ puts "id:" + phylogeny_id
+
ids_mapfile_name = nil
domains_mapfile_name = nil
seqs_file_name = nil
file =~ /^#{phylogeny_id}#{suffix_pattern}$/ )
matching_files << file
end
-
-
}
file =~ /^#{phylogeny_id}.+\d$/ )
matching_files << file
end
-
}
if matching_files.length < 1