inprogress

[jalview.git] / forester / ruby / evoruby / lib / evo / tool / phylogeny_factory.rb

diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
index c0770b3..7205451 100644 (file)
--- a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
@@ -169,7 +169,7 @@ module Evoruby
             if ( cmd =~ /%/ )
               cmd =~ /(%.*?%)/
               problem = $1
-              puts( '[' + PRG_NAME + '] > WARNING    : [' + id + '] command still contains placeholder: ' + problem )
+              puts( '[' + PRG_NAME + '] > WARNING    : [' + aln_name + '] command still contains placeholder: ' + problem )
               log << "WARNING: command still contains placeholder: " + cmd + NL
             else
               tmp_cmd_file = file.to_str[ 0..4 ] + TMP_CMD_FILE_SUFFIX