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[jalview.git] / forester / test_data / phyloxml_test_t1.xml

diff --git a/forester/test_data/phyloxml_test_t1.xml b/forester/test_data/phyloxml_test_t1.xml
index 8e93470..c2e1d10 100644 (file)
--- a/forester/test_data/phyloxml_test_t1.xml
+++ b/forester/test_data/phyloxml_test_t1.xml
@@ -49,7 +49,6 @@
             <green>22</green>
             <blue>33</blue>
          </color>
-         <node_id>root id</node_id>
          <taxonomy>
             <id provider="ncbi">1</id>
             <code>ECDYS</code>
@@ -109,7 +108,6 @@
                <green>14</green>
                <blue>16</blue>
             </color>
-            <node_id provider="nodeid">a id</node_id>
             <taxonomy>
                <id provider="ncbi">123</id>
                <code>CAEEL</code>
@@ -121,6 +119,9 @@
             <sequence>
                <name>CAEEL_XYZ</name>
             </sequence>
+            <events>
+                <duplications>1</duplications>
+            </events>
          </clade>
          <clade>
             <name>node b</name>
@@ -194,11 +195,14 @@
                   <name>bc seq</name>
                   <domain_architecture length="124">
                      <domain from="120" to="130" confidence="0.9" id=""> A </domain>
-                     <domain from="21" to="44" confidence="2144" id="pfam"> B </domain>
+                     <domain from="21" to="44" confidence="0" id="pfam"> B </domain>
                      <domain to="43" confidence="1.0E-89" from="34" id=""> C </domain>
-                     <domain id="123" from="34" to="43" confidence="-1.3e-34"> D </domain>
+                     <domain id="123" from="34" to="43" confidence="1.3e-34"> D </domain>
                   </domain_architecture>
                </sequence>
+               <events>
+                   <speciations>1</speciations>
+               </events>
                <date>
                    <value>433</value>
                </date>