Merge branch 'feature/JAL-4307_hetatm_showhide' into develop

[jalview.git] / getdown / src / getdown / core / src / main / java / com / threerings / getdown / data / Application.java

diff --git a/getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Application.java b/getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Application.java
index 8048728..435ebbd 100644 (file)
--- a/getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Application.java
+++ b/getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Application.java
@@ -1085,6 +1085,9 @@ public class Application
            log.info("Not setting proxy");
        }
 
+        // add the getdowninstanceappbase property.  getdownappdir is added by getdown.txt
+        args.add("-Dgetdowninstanceappbase=" + getAppbase().toString());
+
         // add the marker indicating the app is running in getdown
         args.add("-D" + Properties.GETDOWN + "=true");
         args.add("-Dsys.install4jVersion=" + Application.i4jVersion);
@@ -1134,7 +1137,6 @@ public class Application
                 String query = jalviewUri.getQuery();
                 
                 _appargs.clear();
-                _appargs.add("-open");
                 if (host != null && host.length() > 0) {
                   URL newUrl = new URL(
                           (https?"https":"http")
@@ -1250,8 +1252,6 @@ public class Application
           }
           if (ext != null && LOCATOR_FILE_EXTENSION.equals(ext.toLowerCase(Locale.ROOT))) {
             // this file extension should have been dealt with in Getdown class
-          } else {
-            _appargs.add(0, "-open");
           }
         }