<mapID target="commandline" url="html/features/commandline.html"/>
<mapID target="jalviewcltool" url="html/features/commandline.html#script"/>
<mapID target="clarguments" url="html/features/clarguments.html"/>
- <mapID target="clarguments-intro" url="html/features/clarguments-intro.html"/>
<mapID target="clarguments-basic" url="html/features/clarguments-basic.html"/>
<mapID target="clarguments-advanced" url="html/features/clarguments-advanced.html"/>
<mapID target="clarguments-argfiles" url="html/features/clarguments-argfiles.html"/>
+ <mapID target="clarguments-reference" url="html/features/clarguments-reference.html"/>
<mapID target="clarguments-old" url="html/features/clarguments-old.html"/>
<mapID target="jvlfiles" url="html/features/jvlfiles.html"/>
<mapID target="io" url="html/io/index.html"/>
<mapID target="pdbfts" url="html/features/pdbsequencefetcher.html#pdbfts" />
<mapID target="siftsmapping" url="html/features/siftsmapping.html" />
<mapID target="pdbchooser" url="html/features/structurechooser.html" />
+ <mapID target="structureandpaefromfile" url="html/features/structurechooser.html#loadfromfile" />
<mapID target="structuresvia3dbeacons" url="html/features/structurechooser.html#3dbeaconssearch" />
+ <mapID target="workingwithpae" url="html/features/paematrices.html" />
+ <mapID target="paematrixformat" url="html/io/paematrixformat.html" />
<mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
<mapID target="biojsmsa" url="html/features/biojsmsa.html" />