<tocitem text="Jalview Documentation" target="home" expand="true">
<tocitem text="What's new" target="new" expand="true">
<tocitem text="Latest Release Notes" target="release"/>
- <tocitem text="Support for ChimeraX" target="chimera"/>
+ <tocitem text="Support for ChimeraX" target="chimera"/>
<tocitem text="Support for Pymol" target="pymol"/>
<tocitem text="Structures via 3D Beacons" target="structuresvia3dbeacons" />
<tocitem text="Startup Memory Settings" target="startupprefs" />
- <tocitem text="The Java Console, Logging and Reporting Bugs" target="logging" />
+ <tocitem text="The Java Console, Logging and Reporting Bugs" target="logging" />
+ <tocitem text="Command line launch scripts" target="jalviewcltool"/>
</tocitem>
<tocitem text="Editing Alignments" target="edit" />
<tocitem text="ClustalX" target="colours.clustal" />
<tocitem text="Zappo" target="colours.zappo" />
<tocitem text="Taylor" target="colours.taylor" />
+ <tocitem text="gecos:flower" target="colours.gecos-flower" />
+ <tocitem text="gecos:blossom" target="colours.gecos-blossom" />
+ <tocitem text="gecos:sunset" target="colours.gecos-sunset" />
+ <tocitem text="gecos:ocean" target="colours.gecos-ocean" />
<tocitem text="Hydrophobicity" target="colours.hydro" />
<tocitem text="Helix propensity" target="colours.helix" />
<tocitem text="Strand propensity" target="colours.strand" />