Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

[jalview.git] / help / help / helpTOC.xml

diff --git a/help/help/helpTOC.xml b/help/help/helpTOC.xml
index cbef398..3308456 100755 (executable)
--- a/help/help/helpTOC.xml
+++ b/help/help/helpTOC.xml
@@ -24,11 +24,12 @@
        <tocitem text="Jalview Documentation" target="home" expand="true">
                        <tocitem text="What's new" target="new" expand="true">
                                <tocitem text="Latest Release Notes" target="release"/>
-        <tocitem text="Support for ChimeraX" target="chimera"/>
+                       <tocitem text="Support for ChimeraX" target="chimera"/>
                                <tocitem text="Support for Pymol" target="pymol"/>
                                <tocitem text="Structures via 3D Beacons" target="structuresvia3dbeacons" />
                                <tocitem text="Startup Memory Settings" target="startupprefs" />
-        <tocitem text="The Java Console, Logging and Reporting Bugs" target="logging" />
+                       <tocitem text="The Java Console, Logging and Reporting Bugs" target="logging" />
+                       <tocitem text="Command line launch scripts" target="jalviewcltool"/>
                </tocitem>
                
                <tocitem text="Editing Alignments" target="edit" />
@@ -89,6 +90,10 @@
                        <tocitem text="ClustalX" target="colours.clustal" />
                        <tocitem text="Zappo" target="colours.zappo" />
                        <tocitem text="Taylor" target="colours.taylor" />
+                       <tocitem text="gecos Flower" target="colours.gecos-flower" />
+                       <tocitem text="gecos Blossom" target="colours.gecos-blossom" />
+                       <tocitem text="gecos Sunset" target="colours.gecos-sunset" />
+                       <tocitem text="gecos Ocean" target="colours.gecos-ocean" />
                        <tocitem text="Hydrophobicity" target="colours.hydro" />
                        <tocitem text="Helix propensity" target="colours.helix" />
                        <tocitem text="Strand propensity" target="colours.strand" />