JAL-4281 store/restore ID width and manual adjustment flag in Jalview projects

[jalview.git] / help / help / helpTOC.xml

diff --git a/help/help/helpTOC.xml b/help/help/helpTOC.xml
index 1cdf4d3..d7ff3d4 100755 (executable)
--- a/help/help/helpTOC.xml
+++ b/help/help/helpTOC.xml
@@ -169,16 +169,17 @@
                        <tocitem text="Groovy Features Counter example" target="groovy.featurescounter"/>
                </tocitem>
                <tocitem text="Command Line" target="commandline" expand="false">
-                       <tocitem text="Command Line: summary" target="clarguments" />
-                       <tocitem text="Command Line: introduction" target="clarguments-intro" />
+                       <tocitem text="Command Line: introduction and reference" target="clarguments" />
                        <tocitem text="Command Line: basic usage" target="clarguments-basic" />
                        <tocitem text="Command Line: advanced usage" target="clarguments-advanced" />
                        <tocitem text="Command Line: argument files" target="clarguments-argfiles" />
+                       <tocitem text="Command Line: reference" target="clarguments-reference" />
+                       <tocitem text="Command Line: old command line arguments" target="clarguments-old" />
                </tocitem>
                <tocitem text="Memory Settings" target="memory" expand="false"/>
                <tocitem text="Jalview Launch Files" target="jvlfiles" expand="false"/>
+               <tocitem text="Privacy" target="privacy" />
     </tocitem>
-       <tocitem text="Privacy" target="privacy" />
        <tocitem text="Useful information" expand="true">
                <tocitem text="Amino Acid Table" target="aminoAcids" />
                <tocitem text="Amino Acid Properties" target="aaProperties" />