</p>
<p>
Jalview can be run from the command line, and provides a <a
- href="clarguments-ng.html">range of arguments</a>.
+ href="clarguments.html">range of arguments</a>.
</p>
<p>There are a few different ways to do this:</p>
<ul>
<li>For older versions of Jalview, call the <a href="#olderinstalls">native launch program directly</a>.
</ul>
<p>
- <strong><a name="script">Jalview's command line launch
- script</a></strong>
+ <strong><a name="script">Jalview's command line launch</a></strong>
<p>Since version 2.11.2, the Jalview native application includes a <strong>launching shell script</strong>. This is the easiest way to
launch an installed Jalview application from the command line. </p><p>To run the <strong>launch script</strong>, simply open a Terminal (or Command prompt on Windows), and type:<pre>
jalview</pre>
included in the source distribution.
</p>
<p>
- Use '-help' to get more information on the <a
+ Use '--help' to get more information on the <a
href="clarguments.html">command line arguments</a> that Jalview
accepts.
</p>