text editor and save them as a file with the extension '.jvl'. To
test, open your saved .jvl file via the OSX File Chooser or Windows
file explorer, or pass it to Jalview via the <a
- href="../commandline.html">command line</a>
+ href="./commandline.html">command line</a>
</p>
<p>
<strong>Passing command line arguments</strong>
<pre>
# Jalview Launch File
# Please install the Jalview Desktop from
-# http://www.jalview.org/getdown/release
+# https://www.jalview.org/getdown/release
# and then try to open this file again
jalview.apparg=-open
-jalview.apparg=http://www.jalview.org/examples/jpred_msa.fasta
+jalview.apparg=https://www.jalview.org/examples/jpred_msa.fasta
jalview.apparg=-annotations
-jalview.apparg=http://www.jalview.org/examples/jpred_msa.seq.concise
+jalview.apparg=https://www.jalview.org/examples/jpred_msa.seq.concise
jalview.apparg=-colour
jalview.apparg=Clustal
</pre>
# Please install the Jalview Desktop from
# http://www.jalview.org/getdown/release
# and then try to open this file again
-appbase=http://www.jalview.org/old/v2_10_5/
+appbase=https://www.jalview.org/getdown/archive/2_10_5/
</pre>
For security, the Jalview application will only allow
- <em>appbase</em> URLs from www.jalview.org, or your local file system.
+ <em>appbase</em> URLs from www.jalview.org.
</body>
</html>