structure information read from PDB will be processed and annotation
added to associated sequences.
<p>
- <em>Use RNAView for secondary structure</em> - if selected, the
- pyRNA RNAView service (<a href="https://github.com/fjossinet/PyRNA">https://github.com/fjossinet/PyRNA</a>)
- will be called to derive secondary structure information for RNA
- chains.
- <p>
<em>Add secondary structure annotation to alignment</em> - if
selected, <a href="http://swift.cmbi.ru.nl/gv/dssp/">Jmol's
implementation DSSP</a> will be used to add annotation to polypeptide
the backbone atoms in the PDB file will be extracted as annotation
lines shown on the alignment.<br/><em>Since 2.11.2, scores from the Temperature Column for structures imported via the 3D-Beacons network may be shown instead as model quality or reliability scores.</em>
<p>
- <em>Default structure viewer</em> - choose Jmol, CHIMERA, CHIMERAX or PYMOL for
+ <em><strong>Default structure viewer</strong></em> - choose Jmol, CHIMERA, CHIMERAX or PYMOL for
viewing 3D structures.
<p>
<em>Path to Chimera/X/Pymol program</em> - Optional, as Jalview will search