</ul></li>
</ul>
<p>
+ <strong>Troubleshooting</strong>
+ </p>
+ Jalview will try to automatically configure itself according to the
+ configured Pymol installation (or the first one it discovers in the
+ standard installation locations). You can see which Pymol executable
+ is being used by enabling
+ <em>DEBUG</em> output in
+ <a href="../logging.html">Jalview's Java console</a>.
+ <br />
+ <br />If Jalview raises warning messages about Pymol not being located
+ or executed, or no structures appear when Jalview launches Pymol,
+ please ask for help on
+ <a href="https://discourse.jalview.org">Jalview's discussion forum</a>.
+ <p>
<strong>Pymol and Windows Firewall</strong>
</p>
Jalview and Pymol communicate using the
<a href="https://pymolwiki.org/index.php/RPC">Pymol's XML-RPC over
- HTTP interface</a>(https://pymolwiki.org/index.php/RPC).
+ HTTP interface</a> (https://pymolwiki.org/index.php/RPC).
<br> Technically this requires both Pymol and Jalview to open
ports on the local network, and this may be blocked by Windows