JAL-3407 JAL-3562 release notes

[jalview.git] / help / help / html / releases.html

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 6e5e2ba..8ae6f83 100755 (executable)
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -62,40 +62,37 @@ li:before {
       <td align="left" valign="top">
         <ul>
           <li>
-            <!-- JAL-3187 -->Option to show 'virtual' codon features on
-            protein (or vice versa)
-            <ul>
-              <li>
-                <!-- JAL-3304 -->Option to export virtual features if
-                shown
-              </li>
-              <li>
-                <!-- JAL-3302 -->Option to transfer virtual features to
-                Chimera
-              </li>
-            </ul>
+            <!-- JAL-3187,JAL-3305,JAL-3304,JAL-3302 -->Map 'virtual'
+            codon features shown on protein (or vice versa) for display
+            in alignments, on structure views and for export.
           </li>
           <li>
-          <!-- JAL-3121 -->Feature attributes from VCF files can be exported and re-imported as GFF3 files
+            <!-- JAL-3121 -->Feature attributes from VCF files can be
+            exported and re-imported as GFF3 files
           </li>
           <li>
-            <!-- JAL-3376 -->Capture VCF &quot;fixed column&quot; values POS,
-            ID, QUAL, FILTER as Feature Attributes
+            <!-- JAL-3376 -->Capture VCF &quot;fixed column&quot; values
+            POS, ID, QUAL, FILTER as Feature Attributes
           </li>
           <li>
-            <!-- JAL-3375 -->More robust VCF numeric data field validation while parsing
+            <!-- JAL-3375 -->More robust VCF numeric data field
+            validation while parsing
           </li>
           <li>
-            <!-- JAL-3533 -->Feature Settings dialog keeps same screen position if reopened 
-           </li>
+            <!-- JAL-3533 -->Feature Settings dialog keeps same screen
+            position if reopened
+          </li>
           <li>
-            <!-- JAL-3538 -->Font anti-aliasing in alignment views enabled by default
-           </li>
+            <!-- JAL-3538 -->Font anti-aliasing in alignment views
+            enabled by default
+          </li>
           <li>
-            <!-- JAL-3468 -->Very long feature descriptions truncated in tooltips and menus
-           </li>
+            <!-- JAL-3468 -->Very long feature descriptions truncated in
+            tooltips and menus
+          </li>
           <li>
-            <!-- JAL-3549 -->Warn if Sort by Score or Density attempted with no feature types visible 
+            <!-- JAL-3549 -->Warn if Sort by Score or Density attempted
+            with no feature types visible
           </li>
         </ul><em>Jalview Installer</em>
            <ul>
@@ -142,10 +139,17 @@ li:before {
       <td align="left" valign="top">
         <ul>
           <li>
-            <!-- JAL-3412 -->ID margins for CDS and Protein views not equal when split frame is first opened
+            <!-- JAL-3549 -->Undo 'Null' operation shown after sort by
+            buttons in Feature Settings dialog are clicked when no
+            features are visible
+          </li>
+          <li>
+            <!-- JAL-3412 -->ID margins for CDS and Protein views not
+            equal when split frame is first opened
           </li>
           <li>
-            <!-- JAL-3296 -->Sequence position numbers in status bar not correct after editing a sequence's start position
+            <!-- JAL-3296 -->Sequence position numbers in status bar not
+            correct after editing a sequence's start position
           </li>
           <li>
             <!-- JAL-3377 -->Alignment is misaligned in wrapped mode
@@ -173,10 +177,12 @@ li:before {
             IllegalArgumentException in some circumstances
           </li>
           <li>
-            <!-- JAL-3534 -->Multiple feature settings dialogs can be opened for a view
+            <!-- JAL-3534 -->Multiple feature settings dialogs can be
+            opened for a view
           </li>
           <li>
-            <!-- JAL-2764 -->Feature Settings dialog is orphaned if alignment window is closed
+            <!-- JAL-2764 -->Feature Settings dialog is orphaned if
+            alignment window is closed
           </li>
           <li>
             <!-- JAL-3406 -->Credits missing some authors in Jalview
@@ -185,22 +191,26 @@ li:before {
         </ul> <em>Java 11 Compatibility issues</em>
         <ul>
           <li>
-            <!-- JAL-2987 -->OSX - Can't view some search results in PDB/Uniprot search panel
+            <!-- JAL-2987 -->OSX - Can't view some search results in
+            PDB/Uniprot search panel
           </li>
-       </ul> <em>Installer</em>
+        </ul> <em>Installer</em>
         <ul>
-          <li><!-- JAL-3447 -->Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
+          <li>
+            <!-- JAL-3447 -->Jalview should not create file associations
+            for 3D structure files (.pdb, .mmcif. .cif)
           </li>
         </ul> <em>Repository and Source Release</em>
         <ul>
           <li>
-            <!-- JAL-3474 -->removed obsolete .cvsignore files from repository
+            <!-- JAL-3474 -->removed obsolete .cvsignore files from
+            repository
           </li>
           <li>
-            <!-- JAL-3541 -->Clover report generation running out of memory
+            <!-- JAL-3541 -->Clover report generation running out of
+            memory
           </li>
-        </ul>
-        <em>New Known Issues</em>
+        </ul> <em>New Known Issues</em>
         <ul>
           <li>
             <!-- JAL-3523 -->OSX - Current working directory not
@@ -213,7 +223,12 @@ li:before {
             enabled
           </li>
           <li>
-            <!-- JAL-3542 -->Jalview Installation type always reports 'Source' in console output
+            <!-- JAL-3542 -->Jalview Installation type always reports
+            'Source' in console output
+          </li>
+          <li>
+            <!-- JAL-3562 -->Test Suite: Certain Functional tests fail on jalview's
+            bamboo server but run fine locally.
           </li>
         </ul>
       </td>