<!-- JAL-3633 -->Preferences -> Connections, Proxy server settings now allow selecting "No proxy", "System proxy settings" or custom proxy settings
which can be configured for HTTP, HTTPS and allows for an authenticated proxy server.
</li>
+ <li>
+ <!-- JAL-3695 -->Support import of VCF 4.3 by updating
+ HTSJDK from 2.12 to 2.23
+ </li>
+ <li>
+ <!-- JAL-3621 -->IntervalStore library updated to v.1.1:
+ optimisations and improvements suggested by Bob Hanson and
+ improved compatibility with JalviewJS
+ </li>
+ <li>
+ <!-- JAL-3615 -->Retrieve GZipped stockholm formatted alignments from Pfam and Rfam
+ </li>
+ <li>
+ <!-- JAL-2656 -->Recognise GZipped content for URLs and File import (no longer based on .gz extension)
+ </li>
<li></li>
</ul>
</td>
<!-- JAL-3632 JAL-3633 -->Proxy properties don't set HTTPS proxy for launcher or application.
</li>
<li>
- <!-- JAL- -->
- </li>
- <li>
- <!-- JAL- -->
+ <!-- JAL-3696 -->Errors encountered when processing variants
+ from VCF files yield "Error processing VCF: Format specifier
+ '%s'" on the console
</li>
<li>
- <!-- JAL- -->
+ <!-- JAL-3697 -->Count of features not shown can be wrong
+ when there are both local and complementary features mapped
+ to the position under the cursor
</li>
</ul>
</td>