Merge branch 'releases/Release_2_11_1_Branch' into merge/JAL-3628+JAL-3608+JAL-3609...

[jalview.git] / help / help / html / releases.html

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 83a9cc3..8c4ba37 100755 (executable)
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -66,6 +66,29 @@ li:before {
             <!-- JAL-3638 -->Shift+arrow keys navigate to next gap or
             residue in cursor mode
           </li>
+          <li>
+            <!-- JAL-3608 -->Set choice of Look and Feel via system property or command line option, and
+           force use of Metal look and feel as default on linux.
+          </li>
+          <li>
+            <!-- JAL-3633 -->Preferences -&gt; Connections, Proxy server settings now allow selecting "No proxy", "System proxy settings" or custom proxy settings
+           which can be configured for HTTP, HTTPS and allows for an authenticated proxy server.
+          </li>
+          <li>
+            <!-- JAL-3695 -->Support import of VCF 4.3 by updating
+            HTSJDK from 2.12 to 2.23
+          </li>
+          <li>
+            <!-- JAL-3621 -->IntervalStore library updated to v.1.1:
+            optimisations and improvements suggested by Bob Hanson and
+            improved compatibility with JalviewJS
+          </li>
+          <li>
+          <!-- JAL-3615 -->Retrieve GZipped stockholm formatted alignments from Pfam and Rfam
+          </li>
+          <li>
+          <!-- JAL-2656 -->Recognise GZipped content for URLs and File import (no longer based on .gz extension)
+          </li>
           <li></li>
         </ul>
       </td>
@@ -83,6 +106,26 @@ li:before {
             <!-- JAL-3613 -->Peptide-to-CDS tracking broken when
             multiple EMBL gene products shown for a single contig
           </li>
+          <li>
+            <!-- JAL-3628 -->Unable to save update to an existing file on Windows (partially resolved)
+           and Backups -&gt; Single backup scheme not always saving backup file. 
+          </li>
+          <li>
+            <!-- JAL-3609 -->Java 11 only: Automatically set scaling for HiDPI displays in linux.
+          </li>
+          <li>
+            <!-- JAL-3632 JAL-3633 -->Proxy properties don't set HTTPS proxy for launcher or application.
+          </li>
+          <li>
+            <!-- JAL-3696 -->Errors encountered when processing variants
+            from VCF files yield "Error processing VCF: Format specifier
+            '%s'" on the console
+          </li>
+          <li>
+            <!-- JAL-3697 -->Count of features not shown can be wrong
+            when there are both local and complementary features mapped
+            to the position under the cursor
+          </li>
         </ul>
       </td>
     </tr>