JAL-970 document interactive RNA secondary structure editing

[jalview.git] / help / help.jhm

diff --git a/help/help.jhm b/help/help.jhm
index 3c560ab..095196f 100755 (executable)
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -15,10 +15,11 @@
    <mapID target="wsparams" url="html/webServices/webServicesParams.html"/>
    <mapID target="wsprefs" url="html/webServices/webServicesPrefs.html"/>
    <mapID target="msaservice" url="html/webServices/msaclient.html"/>
-   <mapID target="clustal" url="html/webServices/clustalw.html"/>
-   <mapID target="muscle" url="html/webServices/muscle.html"/>
-   <mapID target="mafft" url="html/webServices/mafft.html"/>
    <mapID target="jnet" url="html/webServices/jnet.html"/>
+   <mapID target="shmrws" url="html/webServices/shmr.html"/>
+   <mapID target="newsreader" url="html/webServices/newsreader.html"/>
+   <mapID target="disorder" url="html/webServices/proteinDisorder.html"/>
+   <mapID target="aacon" url="html/webServices/AACon.html"/>
    <mapID target="seqfetch" url="html/features/seqfetch.html"/>
    <mapID target="dbreffetcher" url="html/webservices/dbreffetcher.html"/>
    <mapID target="seqmappings" url="html/features/seqmappings.html"/>
@@ -36,6 +37,8 @@
    <mapID target="clarguments" url="html/features/clarguments.html"/>
    <mapID target="io" url="html/io/index.html"/>
    <mapID target="io.modellerpir" url="html/io/modellerpir.html"/>
+   <mapID target="io.seqreport" url="html/io/exportseqreport.html"/>
+   <mapID target="io.tcoffeescores" url="html/io/tcoffeescores.html"/>
    <mapID target="export" url="html/io/export.html"/>
    <mapID target="alformats" url="html/io/fileformats.html"/>
    <mapID target="annotations.fileformat" url="html/features/annotationsFormat.html"/>
@@ -104,6 +107,7 @@
    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
    <mapID target="aaProperties" url="html/misc/aaproperties.html" />
    <mapID target="geneticCode" url="html/misc/geneticCode.html" />
+   <mapID target="subtMatrices" url="html/calculations/scorematrices.html" />
    
    <mapID target="backIcon" url="icons/back.png" />
    <mapID target="forwardIcon" url="icons/forward.png" />