added the sorting entry to calculations, and corrected the PID

[jalview.git] / help / help.jhm

diff --git a/help/help.jhm b/help/help.jhm
index 627a8c0..36a54e4 100755 (executable)
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -2,7 +2,6 @@
    <!DOCTYPE map PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN" "http://java.sun.com/products/javahelp/map_1_0.dtd">\r
 <map version="1.0">\r
    <mapID target="home" url="html/index.html" />\r
-   <mapID target="start" url="html/start.html"/>\r
    \r
    <mapID target="new" url="html/whatsNew.html"/>\r
    <mapID target="search" url="html/features/search.html"/>\r
@@ -15,9 +14,10 @@
    \r
    <mapID target="io" url="html/io/index.html"/>\r
    <mapID target="edit" url="html/editing/index.html"/>\r
-   \r
+\r
+   <mapID target="calculations" url="html/calculations/index.html"/>\r
    <mapID target="trees" url="html/calculations/tree.html"/>\r
-   <mapID target="conservation" url="html/calculations/conservation.html"/> \r
+   <mapID target="sorting" url="html/calculations/sorting.html"/>\r
    <mapID target="pca" url="html/calculations/pca.html"/>\r
    <mapID target="pairwise" url="html/calculations/pairwise.html"/>\r
    <mapID target="redundancy" url="html/calculations/redundancy.html"/>\r
@@ -38,6 +38,12 @@
    <mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>\r
    <mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>\r
    \r
+   <mapID target="menus" url="html/menus/index.html"/>\r
+   <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>\r
+   <mapID target="alMenu" url="html/menus/alignmentMenu.html"/>\r
+   <mapID target="popMenu" url="html/menus/popupMenu.html"/>\r
+   \r
+   \r
    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />\r
    <mapID target="geneticCode" url="html/misc/geneticCode.html" />\r
    \r