<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
<mapID target="home" url="html/index.html" />
<mapID target="new" url="html/whatsNew.html"/>
- <mapID target="release" url="html/releases.html"/>
+ <mapID target="release" url="html/releases.html#Jalview.2.10.3b1"/>
<mapID target="alannotation" url="html/features/annotation.html"/>
<mapID target="keys" url="html/keys.html"/>
<mapID target="newkeys" url="html/features/newkeystrokes.html"/>
<mapID target="wsparams" url="html/webServices/webServicesParams.html"/>
<mapID target="wsprefs" url="html/webServices/webServicesPrefs.html"/>
<mapID target="msaservice" url="html/webServices/msaclient.html"/>
- <mapID target="jnet" url="html/webServices/jnet.html"/>
+ <mapID target="jpred" url="html/webServices/jnet.html"/>
<mapID target="shmrws" url="html/webServices/shmr.html"/>
<mapID target="newsreader" url="html/webServices/newsreader.html"/>
<mapID target="disorder" url="html/webServices/proteinDisorder.html"/>
<mapID target="aacon" url="html/webServices/AACon.html"/>
<mapID target="rnaalifold" url="html/webServices/RNAalifold.html"/>
+ <mapID target="seqannots" url="html/features/annotation.html#seqannots"/>
<mapID target="seqfetch" url="html/features/seqfetch.html"/>
<mapID target="dbreffetcher" url="html/webServices/dbreffetcher.html"/>
<mapID target="seqmappings" url="html/features/seqmappings.html"/>
<mapID target="viewingpdbs.reps" url="html/features/viewingpdbs.html#viewreps"/>
<mapID target="pdbmcviewer" url="html/features/pdbviewer.html"/>
<mapID target="pdbjmol" url="html/features/jmol.html"/>
+ <mapID target="chimera" url="html/features/chimera.html"/>
<mapID target="varna" url="html/features/varna.html"/>
+ <mapID target="xsspannotation" url="html/features/xsspannotation.html"/>
<mapID target="preferences" url="html/features/preferences.html"/>
+ <mapID target="strucprefs" url="html/features/preferences.html#structure"/>
<mapID target="commandline" url="html/features/commandline.html"/>
<mapID target="clarguments" url="html/features/clarguments.html"/>
<mapID target="io" url="html/io/index.html"/>
<mapID target="edit" url="html/editing/index.html"/>
<mapID target="jalarchive" url="html/features/jalarchive.html"/>
<mapID target="multipleviews" url="html/features/multipleViews.html"/>
+ <mapID target="splitframe" url="html/features/splitView.html"/>
+ <mapID target="splitframe.mirrorfonts" url="html/features/splitView.html#mirror"/>
<mapID target="trees" url="html/calculations/tree.html"/>
<mapID target="treeviewer" url="html/calculations/treeviewer.html"/>
<mapID target="sorting" url="html/calculations/sorting.html"/>
<mapID target="pca" url="html/calculations/pca.html"/>
<mapID target="pairwise" url="html/calculations/pairwise.html"/>
<mapID target="redundancy" url="html/calculations/redundancy.html"/>
+ <mapID target="referenceseq" url="html/calculations/referenceseq.html"/>
<mapID target="hiddenRegions" url="html/features/hiddenRegions.html"/>
<mapID target="recoverInputdata" url="html/calculations/recoverInputdata.html"/>
<mapID target="colours" url="html/colourSchemes/index.html"/>
<mapID target="calcs.alquality" url="html/calculations/quality.html"/>
<mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
<mapID target="calcs.alstrconsensus" url="html/calculations/structureconsensus.html"/>
- <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>
+ <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>
+ <mapID target="calcs.dialog" url="html/calculations/calculations.html"/>
<mapID target="nucleicAcids" url="html/na/index.html"/>
<mapID target="alwEdit" url="html/menus/alwedit.html"/>
<mapID target="alwSelect" url="html/menus/alwselect.html"/>
<mapID target="alwView" url="html/menus/alwview.html"/>
+ <mapID target="alwAnnotations" url="html/menus/alwannotation.html"/>
<mapID target="alwFormat" url="html/menus/alwformat.html"/>
<mapID target="alwColour" url="html/menus/alwcolour.html"/>
<mapID target="alwCalc" url="html/menus/alwcalculate.html"/>
<mapID target="wsMenu" url="html/menus/wsmenu.html"/>
<mapID target="popMenu" url="html/menus/popupMenu.html"/>
- <mapID target="annotMenus" url="html/menus/alwannotations.html"/>
+ <mapID target="popMenuAddref" url="html/menus/popupMenu.html#addrefannot"/>
+ <mapID target="annotPanelMenu" url="html/menus/alwannotationpanel.html"/>
<mapID target="memory" url="html/memory.html" />
- <mapID target="jalviewjnlp" url="html/jalviewjnlp.html" />
<mapID target="groovy" url="html/features/groovy.html" />
+ <mapID target="groovy.colours" url="html/features/groovy.html#groovyColours" />
+ <mapID target="groovy.featurescounter" url="html/groovy/featuresCounter.html" />
<mapID target="privacy" url="html/privacy.html" />
<mapID target="vamsas" url="html/vamsas/index.html"/>
<mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
<mapID target="subtMatrices" url="html/calculations/scorematrices.html" />
<mapID target="subtMatrices.pam250" url="html/calculations/scorematrices.html#pam250" />
+ <mapID target="biojson" url="html/features/bioJsonFormat.html" />
+ <mapID target="pdbfetcher" url="html/features/pdbsequencefetcher.html" />
+ <mapID target="siftsmapping" url="html/features/siftsmapping.html" />
+ <mapID target="pdbchooser" url="html/features/structurechooser.html" />
+ <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
+ <mapID target="biojsmsa" url="html/features/biojsmsa.html" />
+
+ <mapID target="ensemblfetch" url="html/features/ensemblsequencefetcher.html" />
+
+ <mapID target="uniprotfetcher" url="html/features/uniprotsequencefetcher.html" />
+
+ <mapID target="urllinks" url="html/webServices/urllinks.html" />
+ <mapID target="linksprefs" url="html/features/preferences.html#links" />
+
<mapID target="backIcon" url="icons/back.png" />
<mapID target="forwardIcon" url="icons/forward.png" />
<mapID target="homeIcon" url="icons/Home.png" />
<mapID target="printIcon" url="icons/print.png" />
<mapID target="printSetupIcon" url="icons/setup.png" />
+
+ <mapID target="overview" url="html/features/overview.html" />
+ <mapID target="overviewprefs" url="html/features/preferences.html#overview" />
</map>