more precise methods information in help description.

[jalview.git] / help / helpIndex.xml

diff --git a/help/helpIndex.xml b/help/helpIndex.xml
index 7d62840..62ea52f 100755 (executable)
--- a/help/helpIndex.xml
+++ b/help/helpIndex.xml
@@ -1,13 +1,16 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>\r
 <!DOCTYPE index  PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Index Version 1.0//EN" "http://java.sun.com/products/javahelp/index_1_0.dtd">\r
 <index version="1.0">\r
-       <indexitem text="Menus">\r
-               <indexitem text="File" target="home"/>\r
-               <indexitem text="Edit" target="home"/>\r
-               <indexitem text="Font" target="home"/>\r
-               <indexitem text="View" target="home"/>\r
-               <indexitem text="Colour" target="home"/>\r
-               <indexitem text="Calculate" target="home"/>\r
-               <indexitem text="Align" target="home"/>\r
+       <indexitem text="Jalview Documentation">\r
+               <indexitem text="Getting started" target="start"/>\r
+               <indexitem text="Whats new" target="new"/>\r
+               <indexitem text="Web Services" target="webservice"/>\r
+               <indexitem text="Input / Output" target="io"/>\r
+               <indexitem text="Editing Alignment" target="edit"/>\r
+               <indexitem text="Colour Schemes" target="colours"/>\r
+               <indexitem text="Calculating and viewing trees" target="trees"/>\r
+               <indexitem text="Conservation" target="colours.conservation"/>\r
+               <indexitem text="Principal Component Analysis" target="pca"/>\r
        </indexitem>\r
+       <indexitem text="Useful Information" target="home"/>\r
 </index>\r