<tocitem text="Release History" target="release"/>
<tocitem text="PDB Viewing with Jmol" target="pdbjmol"/>
<tocitem text="Mapping between Sequences" target="seqmappings"/>
- <tocitem text="Coding Region Sequence Features" target="cdnafeatures"/>
</tocitem>
<tocitem text="Editing Alignments" target ="edit"/>
<tocitem text="Cursor Mode" target="cursor"/>
<tocitem text="Making figures" target="export"/>
<tocitem text="Hidden Regions" target="hiddenRegions"/>
<tocitem text="Multiple Views" target="multipleviews"/>
+ <tocitem text="Viewing Trees" target="treeviewer" expand="false"/>
<tocitem text="Sequence Features" target="seqfeatures" expand="false">
<tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>
<tocitem text="Sequence Features File" target="features.fileformat"/>
<tocitem text="Pairwise Alignments" target="pairwise"/>
<tocitem text="Remove Redundancy" target="redundancy"/>
</tocitem>
- <tocitem text="Alignment Annotations" target ="alannotation" expand="false">
+ <tocitem text="Alignment Annotations" target ="alannotation" expand="false">
<tocitem text="Conservation" target="calcs.alconserv"/>
<tocitem text="Quality" target="calcs.alquality"/>
<tocitem text="Consensus" target="calcs.consensus"/>
</tocitem>
<tocitem text="Command Line" target="commandline" expand="false">
<tocitem text="Command Line Arguments" target="clarguments"/>
+ <tocitem text="Groovy Shell" target="groovy"/>
</tocitem>
</tocitem>
<tocitem text="Useful information" expa nd="true">