Group colours not used

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 77f105e..5e69a23 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -9,8 +9,10 @@
                 <tocitem text="Sequence Feature Styles" target="seqfeatures"/>\r
         </tocitem>\r
        <tocitem text="Release History" target="release"/>\r
-       <tocitem text="Alignment Annotations" target ="alannotation"/>\r
-       \r
+       <tocitem text="Alignment Annotations" target ="alannotation" expand="false">\r
+          <tocitem text="Conservation" target="calcs.alconserv"/>\r
+          <tocitem text="Quality" target="calcs.alquality"/>\r
+        </tocitem>\r
        <tocitem text="Input / Output" target="io"/>\r
        <tocitem text="Key Strokes" target="keys"/>\r
        <tocitem text="Making figures" target="export"/>\r
@@ -56,10 +58,13 @@
                <tocitem text="Popup Menu" target="popMenu"/>\r
                 </tocitem>\r
        </tocitem>\r
-       <tocitem text="Memory Settings" target="memory"/>\r
+       <tocitem text="Memory Settings" target="memory" expand="false">\r
+          <tocitem text="JNLP with extra memory parameters" target="jalviewjnlp"/>\r
+          </tocitem>\r
 </tocitem>\r
 <tocitem text="Useful information" expand="true">\r
        <tocitem text="Amino Acid Table" target="aminoAcids"/>\r
+       <tocitem text="Amino Acid Properties" target="aaProperties"/>\r
        <tocitem text="The Genetic Code" target="geneticCode"/>\r
 </tocitem>\r
 </toc>\r