JAL-1483 more explicit description of feature similarity calculation

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 9cfd17e..75ff4c4 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
-<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) * 
-       Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. 
+<!-- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * 
+       Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. 
        * * Jalview is free software: you can redistribute it and/or * modify it 
        under the terms of the GNU General Public License * as published by the Free 
        Software Foundation, either version 3 * of the License, or (at your option) 
@@ -29,8 +29,13 @@
                <tocitem text="Making Figures" target="export" />
                <tocitem text="Hidden Regions" target="hiddenRegions" />
                <tocitem text="Multiple Views" target="multipleviews" />
+               <tocitem text="Split Frame View" target="splitframe" />
                <tocitem text="Viewing Trees" target="treeviewer" expand="false" />
-               <tocitem text="Fetching Sequences" target="seqfetch" />
+               <tocitem text="Fetching Sequences" target="seqfetch" />         
+               <tocitem text="BioJSON v1.0" target="biojson" />
+               <tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
+               <tocitem text="PDB Structure Chooser" target="pdbchooser" />
+               <tocitem text="Select columns by annotation" target="selectcolbyannot" />
                <tocitem text="Nucleic Acid Support" target="nucleicAcids" expand="false">
                        <tocitem text="Viewing RNA structure" target="varna" />
                        <tocitem text="RNA Structure Consensus" target="calcs.alstrconsensus" />