graduated feature schemes

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index bd5a9d5..8490970 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,21 +1,21 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
 <!--
-   * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
-   * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-   * 
-   * This program is free software; you can redistribute it and/or
-   * modify it under the terms of the GNU General Public License
-   * as published by the Free Software Foundation; either version 2
-   * of the License, or (at your option) any later version.
-   * 
-   * This program is distributed in the hope that it will be useful,
-   * but WITHOUT ANY WARRANTY; without even the implied warranty of
-   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-   * GNU General Public License for more details.
-   * 
-   * You should have received a copy of the GNU General Public License
-   * along with this program; if not, write to the Free Software
-   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+  Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2)
+  Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+  
+  This program is free software; you can redistribute it and/or
+  modify it under the terms of the GNU General Public License
+  as published by the Free Software Foundation; either version 2
+  of the License, or (at your option) any later version.
+  
+  This program is distributed in the hope that it will be useful,
+  but WITHOUT ANY WARRANTY; without even the implied warranty of
+  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+  GNU General Public License for more details.
+  
+  You should have received a copy of the GNU General Public License
+  along with this program; if not, write to the Free Software
+  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 -->
 <!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
 <toc version="1.0">
@@ -37,6 +37,7 @@
        <tocitem text="Sequence Features" target="seqfeatures" expand="false">
           <tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>
           <tocitem text="Sequence Features File" target="features.fileformat"/>
+          <tocitem text="Feature Colourschemes" target="features.featureschemes"/>
           <tocitem text="User Defined Sequence Features" target="seqfeatcreat"/>
                  <tocitem text="Editing Sequence Features" target="seqfeatedit"/>
           <tocitem text="DAS Feature Retrieval" target="das.viewing"/>
@@ -116,6 +117,7 @@
           <tocitem text="Command Line Arguments" target="clarguments"/>
              <tocitem text="Groovy Shell" target="groovy"/>
         </tocitem>
+               <tocitem text="Privacy" target="privacy"/>
 </tocitem>
 <tocitem text="Useful information" expa nd="true">
        <tocitem text="Amino Acid Table" target="aminoAcids"/>