new jalview paper and prep for release

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 1762e22..9ad08fa 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -4,9 +4,9 @@
 <tocitem text="Jalview Documentation" target="home" expand="true" >
        <tocitem text="What's new" target="new" expand="true">
       <tocitem text="Release History" target="release"/>
-         <tocitem text="PDB Viewing with Jmol" target="pdbjmol"/>
-         <tocitem text="Mapping between Sequences" target="seqmappings"/>
-    </tocitem>
+               <tocitem text="Sequence Retrieval" target="seqfetch"/>
+               <tocitem text="VAMSAS Interoperation" target="vamsas"/>
+       </tocitem>
     <tocitem text="Editing Alignments" target ="edit"/>        
     <tocitem text="Cursor Mode" target="cursor"/>
        <tocitem text="Key Strokes" target="keys"/>
@@ -71,6 +71,10 @@
          <tocitem text="Jmol Viewer" target="pdbjmol"/>
          <tocitem text="Simple PDB Viewer" target="pdbmcviewer"/>
        </tocitem>
+       <tocitem text="VAMSAS Data Exchange" target="vamsas">
+               <!-- what can Jalview share with other apps -->
+               <!-- what other apps exist -->
+               </tocitem>
        <tocitem text="Window Menus" target="menus" expand="false">
                <tocitem text="Desktop Window" target="desktopMenu"/>
                <tocitem text="Alignment Window" target="alMenu">