JAL-384 documentation on custom colours groovy examples

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index b55a592..a8aadf5 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -24,7 +24,11 @@
        <tocitem text="Jalview Documentation" target="home" expand="true">
                        <tocitem text="What's new" target="new" expand="true">
                                <tocitem text="Latest Release Notes" target="release"/>
-                               <tocitem text="Split Frame View" target="splitframe.mirrorfonts" />
+                               <tocitem text="Groovy Features Counter example" target="groovy.featurescounter"/>
+                               <tocitem text="Custom Colourschemes in Groovy" target="groovy.colours"/>
+                               <tocitem text="Omit hidden regions in Overview" target="overview"/>
+                               <tocitem text="identifers.org for URL Links" target="linksprefs" />
+                               <tocitem text="New features in Split Frame View" target="splitframe.mirrorfonts" />
                </tocitem>
                
                <tocitem text="Editing Alignments" target="edit" />
@@ -133,7 +137,7 @@
                </tocitem>
                <tocitem text="Viewing RNA structures" target="varna" expand="false"/>
                <tocitem text="Opening URLs from Jalview" target="urllinks" expand="true">
-                   <tocitem text="Configuring URL Links" target="urllinkspref" />
+                   <tocitem text="Configuring URL Links" target="linksprefs" />
                </tocitem>
                <tocitem text="VAMSAS Data Exchange" target="vamsas">
                        <!-- what can Jalview share with other apps -->
@@ -158,7 +162,7 @@
                <tocitem text="Preferences" target="preferences" />
                <tocitem text="Memory Settings" target="memory" expand="false"/>
                <tocitem text="Scripting with Groovy" target="groovy">
-                       <tocitem text="Groovy Feature Counter example" target="groovy.featurecounter"/>
+                       <tocitem text="Groovy Features Counter example" target="groovy.featurescounter"/>
                </tocitem>
                <tocitem text="Command Line" target="commandline" expand="false">
                        <tocitem text="Command Line Arguments" target="clarguments" />