Added menus

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 160021c..ca759ee 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -8,14 +8,11 @@
                <tocitem text="Overview Window" target ="overview"/>\r
                <tocitem text="Sequence Features" target ="seqfeatures"/>\r
        </tocitem>\r
-       <tocitem text="Web Services" target="webservice" expand="false">\r
-                <tocitem text="Clustal Alignment" target="clustal"/>\r
-                <tocitem text="Muscle Alignment" target="muscle"/>\r
-                <tocitem text="JNet Secondary Structure Prediction" target="jnet"/>\r
-       </tocitem>\r
        <tocitem text="Input /Output" target="io"/>\r
        <tocitem text="Editing Alignment" target ="edit"/>\r
-       <tocitem text="Viewing Trees" target ="treeview"/>\r
+       <tocitem text="Web Services" target="webservice" expand="false">\r
+               <tocitem text="Clustal Alignment" target="clustal"/>\r
+       </tocitem>\r
        <tocitem text="Colour Schemes" target="colours" expand="false">\r
                <tocitem text="ClustalX" target="colours.clustal"/>\r
                <tocitem text="Zappo" target="colours.zappo"/>\r
@@ -32,13 +29,17 @@
                <tocitem text="Above Percentage Identity" target="colours.abovepid"/>\r
                <tocitem text="By conservation" target="colours.conservation"/>\r
        </tocitem>\r
-       <tocitem text="Calculations" expand="false">\r
-                <tocitem text="Sorting alignments" target="sorting"/>\r
+       <tocitem text="Calculations" target="calculations" expand="false">\r
                <tocitem text="Calculating trees" target="trees"/>\r
                <tocitem text="Principal Component Analysis" target="pca"/>\r
                <tocitem text="Pairwise Alignments" target="pairwise"/>\r
                <tocitem text="Remove Redundancy" target="redundancy"/>\r
        </tocitem>\r
+       <tocitem text="Menus" target="menus" expand="false">\r
+               <tocitem text="Desktop Menu" target="desktopMenu"/>\r
+               <tocitem text="Alignment Menu" target="alMenu"/>\r
+               <tocitem text="Popup Menu" target="popMenu"/>\r
+       </tocitem>\r
 </tocitem>\r
 <tocitem text="Useful information" expand="false">\r
        <tocitem text="Amino Acid Table" target="aminoAcids"/>\r